pfam database Search Results


pfam database  (InterPro Inc)
90
InterPro Inc pfam database
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam Database, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam protein  (InterPro Inc)
90
InterPro Inc pfam protein
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam Protein, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam 34.0 database  (Refgen Technologies INC)
90
Refgen Technologies INC pfam 34.0 database
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam 34.0 Database, supplied by Refgen Technologies INC, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam 34.0 database - by Bioz Stars, 2026-05
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ice-binding-like [pfam/interpro database, pf11999.11]  (InterPro Inc)
90
InterPro Inc ice-binding-like [pfam/interpro database, pf11999.11]
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Ice Binding Like [Pfam/Interpro Database, Pf11999.11], supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam database v33.1  (InterPro Inc)
90
InterPro Inc pfam database v33.1
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam Database V33.1, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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domains predicted by the interpro member databases prosite, smart or pfam  (InterPro Inc)
90
InterPro Inc domains predicted by the interpro member databases prosite, smart or pfam
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Domains Predicted By The Interpro Member Databases Prosite, Smart Or Pfam, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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curated databases pfam  (InterPro Inc)
90
InterPro Inc curated databases pfam
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Curated Databases Pfam, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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dufs within the pfam database  (InterPro Inc)
90
InterPro Inc dufs within the pfam database
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Dufs Within The Pfam Database, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam 7.0 database  (Celera)
90
Celera pfam 7.0 database
a The occurrence among different species was obtained from the respective <t>PFAM</t> entries available in the ‘Taxonomy’ section of <t>the</t> <t>InterPro</t> database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.
Pfam 7.0 Database, supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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proteome analysis database based on pfam, smart, prosite, prints  (InterPro Inc)
90
InterPro Inc proteome analysis database based on pfam, smart, prosite, prints
A key to the databases mentioned in this article
Proteome Analysis Database Based On Pfam, Smart, Prosite, Prints, supplied by InterPro Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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workbench pfam hmm database search tool  (Genedata Inc)
90
Genedata Inc workbench pfam hmm database search tool
A key to the databases mentioned in this article
Workbench Pfam Hmm Database Search Tool, supplied by Genedata Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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pfam 31.0 database  (Informix Software Inc)
90
Informix Software Inc pfam 31.0 database
A key to the databases mentioned in this article
Pfam 31.0 Database, supplied by Informix Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


a The occurrence among different species was obtained from the respective PFAM entries available in the ‘Taxonomy’ section of the InterPro database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.

Journal: Communications Biology

Article Title: The S-component fold: a link between bacterial transporters and receptors

doi: 10.1038/s42003-024-06295-2

Figure Lengend Snippet: a The occurrence among different species was obtained from the respective PFAM entries available in the ‘Taxonomy’ section of the InterPro database https://www.ebi.ac.uk/interpro/entry/pfam/ (PF12822 for S-components, PF04093 for MreD proteins and PF07694 for 5TMR-containing SHKs). b The distribution of S-components, SHKs and MreDs among bacterial phyla. The analysis on the number of species refers to the release InterPro 96.0.

Article Snippet: The PFAM database, now integrated in the InterPro webserver (release InterPro 96.0) , returned as results the entries PF12822 (ECF transporter, substrate-specific component), PF07694 (5TMR of 5TMR-LYT) and PF04093 (rod shape-determining protein MreD), which were then consulted on the corresponding ‘Taxonomy’ section.

Techniques:

a The organization of Energy-Coupling-Factor (ECF) transporters. The pink shaded area highlights the multiple contact points between S-component and the subunits of the ECF tripartite module. b The conservation of the AXXXA motif in helix 1, involved in the transport function of the shared membrane fold. The sequence logos illustrate the amino acid frequency corresponding to the highlighted sequence of helix 1 (red rectangle) reported for S-components, 5TMR-containing SHKs and MreD proteins on https://www.ebi.ac.uk/interpro/entry/pfam/ .

Journal: Communications Biology

Article Title: The S-component fold: a link between bacterial transporters and receptors

doi: 10.1038/s42003-024-06295-2

Figure Lengend Snippet: a The organization of Energy-Coupling-Factor (ECF) transporters. The pink shaded area highlights the multiple contact points between S-component and the subunits of the ECF tripartite module. b The conservation of the AXXXA motif in helix 1, involved in the transport function of the shared membrane fold. The sequence logos illustrate the amino acid frequency corresponding to the highlighted sequence of helix 1 (red rectangle) reported for S-components, 5TMR-containing SHKs and MreD proteins on https://www.ebi.ac.uk/interpro/entry/pfam/ .

Article Snippet: The PFAM database, now integrated in the InterPro webserver (release InterPro 96.0) , returned as results the entries PF12822 (ECF transporter, substrate-specific component), PF07694 (5TMR of 5TMR-LYT) and PF04093 (rod shape-determining protein MreD), which were then consulted on the corresponding ‘Taxonomy’ section.

Techniques: Membrane, Sequencing

A key to the databases mentioned in this article

Journal: Genome Biology

Article Title: Genome cartography through domain annotation

doi:

Figure Lengend Snippet: A key to the databases mentioned in this article

Article Snippet: InterPro , http://www.ebi.ac.uk/interpro/ , Proteome analysis database based on Pfam, SMART, Prosite, PRINTS.

Techniques: Generated, Comparison, Sequencing, Software, Construct, Microarray